Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015891793.1_cds_XP_016446669.1_41503
CDS Infomation

[gene=LOC107771741] [db_xref=GeneID:107771741] [protein=pumilio homolog 1-like isoform X1] [protein_id=XP_016446669.1] [location=join(15690..16325,17453..18864,18950..19091,19231..19338,20278..20490,20577..20687,21438..21632,23011..23185,23805..23845)] [gbkey=CDS]
Sequence

ATGATTACTGATAGCTATGCGAAAATGATGTCGGAAATGGGAATGCGATCAATGTTAGGA
GGAAACAACGATTTTAGTAGCAACGATTTTAGCGAAGAGTTAGGGTTTTTGCTGAGAGAA
CAAAGGCGGCAGCAACAAGAGGTGAGTGATCAAGAGAGAGAACTCAGCATTTTCCGTAGC
GGTTCAGCTCCGCCTACTGTCGAAGGATCGCTTAACGCTTTGATAGGCGGCGGAAGTGGC
GGCGGGAATGGTAGTGATATTAGTGGACTTTCAGAAGAGGAGTTAAGGTCTGATCCAGCG
TACATTTCCTATTATTACTCGAATGTGAATCTAAACCCTAGGCTTCCGCCGCCTCTTTTG
TCTAAAGAGGACTGGAGGTTCGCCCAGCGTCTACAGGGTGGCGGTGGAGGTGGTAGTGGT
GGTAGTTCACCGGCATTAGGAGGGATTGGAGATAGGAGGAAAGGAAACCGTGGTGGTTGT
GATGTTGAGTCGCTTTTTTCAAAGCCGATAGGATTTGGTGGGAAAAATGAGGAAAATGGA
AGTGAGGCGGGGAAGGAGTGGGGCGGGGATGGACTTATTGGATTGCCTGGATTAGGATTA
GGAAGCCGACAAAAGAGCATTGCCGAGATGATTCAGGACAATATGAGCCAGCCAACATCT
ACTTCGAGGCATCCATCACGTCCTGCTTCCCGTGCATATGATGATATTGTTGATCCTTCT
GAGTCCCAATTTGTTCATCTCCATCATGAGATGGCAACTTTGGACGCACTACATTCTCGG
GGAAAGGTTCAAGGTATGTCTACCCTTCAAAATGTCAGCGCATCTGGCTCTCAGTCTTAT
GCTTCAGCCGTGGGTGGATCACTGTCACGAAGTACCACCCCTGACCCTCAGCTTGTGGCT
AGAGCTCCTAGTCCTCGTATTCCTTCTGCTGGAGGAGGGAGGATAGCATCACTAGAGAAT
GTTTCATCTCATATGGGTGAGCATACTGATTTGGCTGCTGCATTGTCTGGCATGAGTCTA
TCAGGGAACAATAGGGGAGACGAAGGGAAACATCCAAAGTCTCAGATTCATAATGAGATG
GATGATCATCAGAACCTCTTTCGATTGCAGAATGGTCAGAATCCTATGAAGCAACATCCA
TATGCAAAAAAGTCTGAATCTGTTCAGTTTCACAAGTCTGCAGGATCCTCTGCTGCATAC
TTGAATGGGCCCTCTACGCCAACTCGCAACTGTGCAAGAGGTTCTCCATCTCAATATCCA
ACTATTGATAGTCCTAACTCAACGTTTTCTGCCTATGCTTTAGGGGGTTATGGTATGAAC
CCTTCATCACCATCTATGTTGGAAAACCAGCTTGGGGCAGGTAATTTTCCTTCTGTACTG
GGAAATATAGCGTCCCCAGTGGGTGCATGTGGAATTGATGCTCGAGCAACAGGAGGAAGT
TTGAGTTTGGGTCCTAATTTATTGGCTGCCGCAGCTGAACTGCAGAACCTTAGACTTGGT
AATCAGACCTTGGGAGGTTCTCTGCAAATGTCTCAGATGGATCCATTGTACCTGCAGTAC
TTGAGATCAACTGAGTATCATGCTGCTCAGCTAGCAGCTCTCAATGACCCAACAGTTAAC
AGGGAATCTTTGGGGACTTCATACATGGATTTGATTGAGCTTCAGAAAGCTTATCTGGAG
ACGTTGCTTGCATCTCAGAATTCCCAATATGGTCTTCCTTATCTTGGCAAATCTGGTGGC
CTAAATCATGGTTACTATGGGAACACAGCAAATGGCCTTAATATGTCATATCCAGGAAGC
CCTTTGGCAGGTGCAGTTCTTCCAAATTCCCCTTTTGGACCTGGTAGTCCTGTAAGGTAT
GGGGAAAGGAACATGCGTTTTCCATCAGGGATGAGAAACTTAGCTGGTGGTGTCATGGGA
GCTTGGCATTCCGAGTCTGTTTCTAACTTGGGTGAAAGCTTTGCTTCCTCGTTATTGGAT
GAGTTTAAGAGCAATAAGAGTAAGTGTTTTGAGCTATCAGAGATTGAAGGCCACGTTGTT
CAGTTCAGCGCGGACCAGTATGGGAGCCGGTTCATTCAACAAAAACTTGAGACTGCTACT
ACAGAAGAGAAAAACATGGTCTTCCATGAAATTATGCCGCAAGCCCTTTCTTTGATGACT
GATGTGTTTGGTAATTATGTGATCCAGAAGTTTTTCGAACATGGAAGTGCATCCCAGATA
AGAGAACTGGCTGAGCAGCTCAATGGGCATGTACTCACCCTTAGCCTTCAGATGTATGGT
TGCCGAGTGATCCAGAAGGCCATAGAGGTGGTTGAACTGGATCAACAGACTAAAATGGTC
GCTGAGCTTGATGGCCATGTTATGCGCTGTGTTAGAGATCAGAATGGGAATCATGTAATC
CAGAAGTGTATCGAATGCATTCCAGAGGAAGCTATCCAGTTCATTGTTTCCACATTTCAT
GATCAAGTTGTGACATTGTCCACTCATCCATATGGATGTCGGGTCATACAGAGAGTCTTG
GAACATTGCCATAATCCTGAAACCCAGAGCATTGTGATGAATGAGATTATGCAATCGATT
TGCATGTTGGCGCAAGATCAATATGGGAATTATGTTGTTCAGCATGTACTGGAACATGGG
AAGCCAGAGGAGCGTTCGTCTATAATTAGTAAGCTGATGGGACAGATAGTTCAGATGAGC
CAGCAAAAATTTGCCTCCAATGTTGTGGAGAAGTGCTTATGCTTCGGAACTCCCGAAGAA
CGTCAGACCTTGGTAGACGAGATGCTTGGCACAACTGATGAAAATGAACCTCTTCAGGCA
ATGATGAAAGATCAGTTTGCCAACTACGTTGTACAGAAAGTGCTGGAGACTTGTGACGAC
CAGCAACTTGAACTCATTCTCAACCGAATCAAGGTTCATCTAAATGCTCTGAAGAAATAT
ACTTACGGAAAGCATATAGTTGCCCGTGTAGAGAAGCTGGTTGCTGCTGGAGAGAGGAGG
ATCAGCTTCCTGGCGTCATATTCTGCTGCTTAG

Peptide Sequence

PEP ID

XP_016446669.1
PEP Infomation

PREDICTED: pumilio homolog 1-like isoform X1 [Nicotiana tabacum]
Sequence

MITDSYAKMMSEMGMRSMLGGNNDFSSNDFSEELGFLLREQRRQQQEVSDQERELSIFRS
GSAPPTVEGSLNALIGGGSGGGNGSDISGLSEEELRSDPAYISYYYSNVNLNPRLPPPLL
SKEDWRFAQRLQGGGGGGSGGSSPALGGIGDRRKGNRGGCDVESLFSKPIGFGGKNEENG
SEAGKEWGGDGLIGLPGLGLGSRQKSIAEMIQDNMSQPTSTSRHPSRPASRAYDDIVDPS
ESQFVHLHHEMATLDALHSRGKVQGMSTLQNVSASGSQSYASAVGGSLSRSTTPDPQLVA
RAPSPRIPSAGGGRIASLENVSSHMGEHTDLAAALSGMSLSGNNRGDEGKHPKSQIHNEM
DDHQNLFRLQNGQNPMKQHPYAKKSESVQFHKSAGSSAAYLNGPSTPTRNCARGSPSQYP
TIDSPNSTFSAYALGGYGMNPSSPSMLENQLGAGNFPSVLGNIASPVGACGIDARATGGS
LSLGPNLLAAAAELQNLRLGNQTLGGSLQMSQMDPLYLQYLRSTEYHAAQLAALNDPTVN
RESLGTSYMDLIELQKAYLETLLASQNSQYGLPYLGKSGGLNHGYYGNTANGLNMSYPGS
PLAGAVLPNSPFGPGSPVRYGERNMRFPSGMRNLAGGVMGAWHSESVSNLGESFASSLLD
EFKSNKSKCFELSEIEGHVVQFSADQYGSRFIQQKLETATTEEKNMVFHEIMPQALSLMT
DVFGNYVIQKFFEHGSASQIRELAEQLNGHVLTLSLQMYGCRVIQKAIEVVELDQQTKMV
AELDGHVMRCVRDQNGNHVIQKCIECIPEEAIQFIVSTFHDQVVTLSTHPYGCRVIQRVL
EHCHNPETQSIVMNEIMQSICMLAQDQYGNYVVQHVLEHGKPEERSSIISKLMGQIVQMS
QQKFASNVVEKCLCFGTPEERQTLVDEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDD
QQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRISFLASYSAA

Transcript Sequence

Gene sequence data has not been registered.